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ushbp1 Usher syndrome 1C binding protein 1 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107094683, updated on 14-Mar-2024

Summary

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Gene symbol
ushbp1
Gene description
Usher syndrome 1C binding protein 1
See related
Ensembl:ENSCVAG00000021932
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Also known as
mcc
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150954.1 (95709..109550)

NW_015150954.1Genomic Context describing neighboring genes Neighboring gene plasmalemma vesicle associated protein b Neighboring gene BRISC and BRCA1 A complex member 1 Neighboring gene nuclear receptor subfamily 2, group F, member 6b Neighboring gene occludin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150954.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
colorectal mutant cancer protein
Names
MCC regulator of WNT signaling pathway
MCC, WNT signaling pathway regulator
mutated in colorectal cancers

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150954.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    95709..109550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015390461.1 → XP_015245947.1  colorectal mutant cancer protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q2EHW6, A0A3Q2GQY0
    Related
    ENSCVAP00000032130.1, ENSCVAT00000027645.1
    Conserved Domains (1) summary
    pfam10506
    Location:326 → 373
    MCC-bdg_PDZ; PDZ domain of MCC-2 bdg protein for Usher syndrome

  2. XM_015390462.1 → XP_015245948.1  colorectal mutant cancer protein isoform X2

    UniProtKB/TrEMBL
    A0A3Q2EHW6
    Related
    ENSCVAP00000032133.1, ENSCVAT00000027651.1
    Conserved Domains (1) summary
    pfam10506
    Location:321 → 385
    MCC-bdg_PDZ; PDZ domain of MCC-2 bdg protein for Usher syndrome
Nucleotide Protein
Heading Accession and Version

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