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chrng cholinergic receptor, nicotinic, gamma [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107092294, updated on 14-Mar-2024

Summary

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Gene symbol
chrng
Gene description
cholinergic receptor, nicotinic, gamma
See related
Ensembl:ENSCVAG00000005777
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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See chrng in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150827.1 (38434..49222)

NW_015150827.1Genomic Context describing neighboring genes Neighboring gene von Willebrand factor A domain containing 5B2 Neighboring gene serine protease 56 Neighboring gene phospholipid scramblase family member 5-like Neighboring gene eukaryotic translation initiation factor 4E family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150827.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit gamma
Names
cholinergic receptor nicotinic gamma subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150827.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    38434..49222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015386677.1 → XP_015242163.1  acetylcholine receptor subunit gamma isoform X2

    UniProtKB/TrEMBL
    A0A3Q2DST9
    Related
    ENSCVAP00000022828.1, ENSCVAT00000008320.1
    Conserved Domains (3) summary
    TIGR00860
    Location:12 → 501
    LIC; Cation transporter family protein
    pfam02931
    Location:28 → 248
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:255 → 500
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  2. XM_015386676.1 → XP_015242162.1  acetylcholine receptor subunit gamma isoform X1

    Conserved Domains (2) summary
    pfam02931
    Location:27 → 247
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:254 → 421
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
Nucleotide Protein
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