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chd1 chromodomain helicase DNA binding protein 1 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107090821, updated on 14-Mar-2024

Summary

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Gene symbol
chd1
Gene description
chromodomain helicase DNA binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150765.1 (14515..32866)

NW_015150765.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C16orf87 homolog Neighboring gene VPS35 retromer complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150765.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150765.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    14515..32866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015384412.1 → XP_015239898.1  chromodomain-helicase-DNA-binding protein 1

    Conserved Domains (5) summary
    cd00046
    Location:51 → 196
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:44 → 316
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:354 → 453
    Helicase_C; Helicase conserved C-terminal domain
    pfam11496
    Location:269 → 470
    HDA2-3; Class II histone deacetylase complex subunits 2 and 3
    pfam13907
    Location:1030 → 1121
    DUF4208; Domain of unknown function (DUF4208)
Nucleotide Protein
Heading Accession and Version

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