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abca12 ATP-binding cassette, sub-family A (ABC1), member 12 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107088038, updated on 14-Mar-2024

Summary

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Gene symbol
abca12
Gene description
ATP-binding cassette, sub-family A (ABC1), member 12
See related
Ensembl:ENSCVAG00000016136
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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See abca12 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
71
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150657.1 (1044412..1116610, complement)

NW_015150657.1Genomic Context describing neighboring genes Neighboring gene von Willebrand factor C domain containing 2 like Neighboring gene BRCA1 associated RING domain 1 Neighboring gene tubulin alpha chain-like Neighboring gene protein O-fucosyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150657.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family A member 12
Names
ATP binding cassette subfamily A member 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150657.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    1044412..1116610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015379958.1 → XP_015235444.1  ATP-binding cassette sub-family A member 12

    UniProtKB/TrEMBL
    A0A3Q2GLB3
    Related
    ENSCVAP00000028720.1, ENSCVAT00000030736.1
    Conserved Domains (3) summary
    cd03263
    Location:4095 → 4321
    ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
    COG1131
    Location:3194 → 3481
    CcmA; ABC-type multidrug transport system, ATPase component [Defense mechanisms]
    pfam12698
    Location:3752 → 4015
    ABC2_membrane_3; ABC-2 family transporter protein
Nucleotide Protein
Heading Accession and Version

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