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tcf19l transcription factor 19 (SC1), like [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107086725, updated on 14-Mar-2024

Summary

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Gene symbol
tcf19l
Gene description
transcription factor 19 (SC1), like
See related
Ensembl:ENSCVAG00000023179
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Also known as
tcf19
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150613.1 (230191..241404)

NW_015150613.1Genomic Context describing neighboring genes Neighboring gene tubulin beta chain-like Neighboring gene uncharacterized LOC107086726 Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene E3 ubiquitin-protein ligase TRIM39-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150613.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150613.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    230191..241404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015377853.1 → XP_015233339.1  transcription factor 19

    UniProtKB/TrEMBL
    A0A3Q2EK97
    Related
    ENSCVAP00000032842.1, ENSCVAT00000033302.1
    Conserved Domains (3) summary
    COG1716
    Location:34 → 120
    FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
    cd00060
    Location:11 → 134
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    cd15609
    Location:511 → 561
    PHD_TCF19; PHD finger found in Transcription factor 19 (TCF-19) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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