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hoxa13a homeobox A13a [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107084358, updated on 14-Mar-2024

Summary

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Gene symbol
hoxa13a
Gene description
homeobox A13a
See related
Ensembl:ENSCVAG00000010073
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Also known as
hoxa13
Orthologs
zebrafish all
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Genomic context

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See hoxa13a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150551.1 (734554..736541)

NW_015150551.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxyisobutyrate dehydrogenase a Neighboring gene even-skipped homeobox 1 Neighboring gene homeobox A11a Neighboring gene homeobox A10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150551.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-A13
Names
homeobox A13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150551.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    734554..736541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015374161.1 → XP_015229647.1  homeobox protein Hox-A13

    UniProtKB/TrEMBL
    A0A3Q2CRW2
    Related
    ENSCVAP00000008288.1, ENSCVAT00000001882.1
    Conserved Domains (2) summary
    pfam00046
    Location:236 → 290
    Homeobox; Homeobox domain
    pfam12284
    Location:30 → 136
    HoxA13_N; Hox protein A13 N terminal
Nucleotide Protein
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Gene LinkOut

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