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rbm20 RNA binding motif protein 20 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107083413, updated on 14-Mar-2024

Summary

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Gene symbol
rbm20
Gene description
RNA binding motif protein 20
See related
Ensembl:ENSCVAG00000021754
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150527.1 (980743..1037717)

NW_015150527.1Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 5 Neighboring gene structural maintenance of chromosomes 3 Neighboring gene programmed cell death 4b Neighboring gene SHOC2 leucine rich repeat scaffold protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150527.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150527.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    980743..1037717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015372614.1 → XP_015228100.1  RNA-binding protein 20

    UniProtKB/TrEMBL
    A0A3Q2DHA0
    Related
    ENSCVAP00000018498.1, ENSCVAT00000027455.1
    Conserved Domains (2) summary
    cd12685
    Location:480 → 555
    RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
    cl17190
    Location:550 → 600
    NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...
Nucleotide Protein
Heading Accession and Version

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