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zeb2b zinc finger E-box binding homeobox 2b [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107082818, updated on 14-Mar-2024

Summary

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Gene symbol
zeb2b
Gene description
zinc finger E-box binding homeobox 2b
See related
Ensembl:ENSCVAG00000022820
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Also known as
zeb2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150516.1 (710376..796416, complement)

NW_015150516.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107082816 Neighboring gene kynureninase Neighboring gene uncharacterized LOC107082819 Neighboring gene activin A receptor type 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150516.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger E-box-binding homeobox 2
Names
zinc finger E-box binding homeobox 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150516.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    710376..796416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015371687.1 → XP_015227173.1  zinc finger E-box-binding homeobox 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2EJ36
    Conserved Domains (6) summary
    COG5048
    Location:1034 → 1087
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5576
    Location:595 → 728
    COG5576; Homeodomain-containing transcription factor [Transcription]
    cd00086
    Location:652 → 696
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00017
    Location:1011 → 1031
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:280 → 302
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:294 → 317
    zf-H2C2_2; Zinc-finger double domain

  2. XM_015371688.1 → XP_015227174.1  zinc finger E-box-binding homeobox 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2DJI8, A0A3Q2EJ36
    Related
    ENSCVAP00000019448.1, ENSCVAT00000028632.1
    Conserved Domains (6) summary
    COG5048
    Location:1033 → 1086
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5576
    Location:594 → 727
    COG5576; Homeodomain-containing transcription factor [Transcription]
    cd00086
    Location:651 → 695
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00017
    Location:1010 → 1030
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:279 → 301
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:293 → 316
    zf-H2C2_2; Zinc-finger double domain

  3. XM_015371686.1 → XP_015227172.1  zinc finger E-box-binding homeobox 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2EJ36
    Conserved Domains (6) summary
    COG5048
    Location:1034 → 1087
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5576
    Location:595 → 728
    COG5576; Homeodomain-containing transcription factor [Transcription]
    cd00086
    Location:652 → 696
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00017
    Location:1011 → 1031
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:280 → 302
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:294 → 317
    zf-H2C2_2; Zinc-finger double domain

  4. XM_015371690.1 → XP_015227176.1  zinc finger E-box-binding homeobox 2 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2EJ36
    Conserved Domains (6) summary
    COG5048
    Location:1007 → 1060
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5576
    Location:594 → 727
    COG5576; Homeodomain-containing transcription factor [Transcription]
    cd00086
    Location:651 → 695
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00017
    Location:240 → 260
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:279 → 301
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:293 → 316
    zf-H2C2_2; Zinc-finger double domain

  5. XM_015371689.1 → XP_015227175.1  zinc finger E-box-binding homeobox 2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2EJ36
    Conserved Domains (6) summary
    COG5048
    Location:1008 → 1061
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5576
    Location:595 → 728
    COG5576; Homeodomain-containing transcription factor [Transcription]
    cd00086
    Location:652 → 696
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00017
    Location:241 → 261
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:280 → 302
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:294 → 317
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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