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atn1 atrophin 1 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107082223, updated on 14-Mar-2024

Summary

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Gene symbol
atn1
Gene description
atrophin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
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Genomic context

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See atn1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150501.1 (1068766..1085490)

NW_015150501.1Genomic Context describing neighboring genes Neighboring gene myeloid leukemia factor 2 Neighboring gene enolase 2 Neighboring gene zinc finger protein 3-like Neighboring gene triosephosphate isomerase 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150501.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
atrophin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150501.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    1068766..1085490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015370779.1 → XP_015226265.1  atrophin-1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2DKE5
    Conserved Domains (2) summary
    pfam03154
    Location:617 → 1210
    Atrophin-1; Atrophin-1 family
    pfam15087
    Location:37 → 135
    DUF4551; Protein of unknown function (DUF4551)

  2. XM_015370780.1 → XP_015226266.1  atrophin-1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2DKE5
    Conserved Domains (2) summary
    pfam03154
    Location:617 → 1210
    Atrophin-1; Atrophin-1 family
    pfam15087
    Location:37 → 135
    DUF4551; Protein of unknown function (DUF4551)

  3. XM_015370781.1 → XP_015226267.1  atrophin-1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2DKE5
    Conserved Domains (2) summary
    pfam03154
    Location:617 → 1210
    Atrophin-1; Atrophin-1 family
    pfam15087
    Location:37 → 135
    DUF4551; Protein of unknown function (DUF4551)

  4. XM_015370776.1 → XP_015226262.1  atrophin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2DKE5
    Conserved Domains (2) summary
    pfam03154
    Location:617 → 1210
    Atrophin-1; Atrophin-1 family
    pfam15087
    Location:37 → 135
    DUF4551; Protein of unknown function (DUF4551)

  5. XM_015370778.1 → XP_015226264.1  atrophin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2DKE5
    Conserved Domains (2) summary
    pfam03154
    Location:617 → 1210
    Atrophin-1; Atrophin-1 family
    pfam15087
    Location:37 → 135
    DUF4551; Protein of unknown function (DUF4551)

RNA

  1. XR_001481127.1 RNA Sequence

  2. XR_001481128.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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