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CHD1 chromodomain helicase DNA binding protein 1 [ Acinonyx jubatus (cheetah) ]

Gene ID: 106987375, updated on 3-Apr-2024

Summary

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Gene symbol
CHD1
Gene description
chromodomain helicase DNA binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Acinonyx jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Acinonychinae; Acinonyx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: A1
Exon count:
38
Annotation release Status Assembly Chr Location
RS_2023_04 current VMU_Ajub_asm_v1.0 (GCF_027475565.1) A1 NC_069380.1 (158019735..158097501, complement)

Chromosome A1 - NC_069380.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene uncharacterized LOC128316233 Neighboring gene repulsive guidance molecule BMP co-receptor b Neighboring gene aprataxin-like Neighboring gene uncharacterized LOC113603364 Neighboring gene uncharacterized LOC128316247

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069380.1 Chromosome A1 Reference VMU_Ajub_asm_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027475565.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VMU_Ajub_asm_v1.0

Genomic

  1. NC_069380.1 Reference VMU_Ajub_asm_v1.0

    Range
    158019735..158097501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027037303.2 → XP_026893104.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J1XKW7, A0A6J1XKX7
    Conserved Domains (5) summary
    cd00024
    Location:304 → 353
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:387 → 441
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam08648
    Location:1672 → 1781
    DUF1777; Protein of unknown function (DUF1777)
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    cl26465
    Location:462 → 998
    SNF2_N; SNF2 family N-terminal domain

  2. XM_053225161.1 → XP_053081136.1  chromodomain-helicase-DNA-binding protein 1 isoform X3

  3. XM_053225160.1 → XP_053081135.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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