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CSPG5 chondroitin sulfate proteoglycan 5 [ Acinonyx jubatus (cheetah) ]

Gene ID: 106987205, updated on 13-Mar-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Acinonyx jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Acinonychinae; Acinonyx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: A2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current VMU_Ajub_asm_v1.0 (GCF_027475565.1) A2 NC_069383.1 (149009058..149062516)

Chromosome A2 - NC_069383.1Genomic Context describing neighboring genes Neighboring gene DExH-box helicase 30 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 Neighboring gene AP-3 complex subunit sigma-1-like Neighboring gene U6 spliceosomal RNA Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene SREBF chaperone

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069383.1 Chromosome A2 Reference VMU_Ajub_asm_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027475565.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VMU_Ajub_asm_v1.0

Genomic

  1. NC_069383.1 Reference VMU_Ajub_asm_v1.0

    Range
    149009058..149062516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027038585.2 → XP_026894386.1  chondroitin sulfate proteoglycan 5 isoform X2

    UniProtKB/TrEMBL
    A0A6J1XPD3
    Conserved Domains (2) summary
    pfam06567
    Location:453 → 492
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
    pfam06566
    Location:38 → 278
    Chon_Sulph_att; Chondroitin sulphate attachment domain

  2. XM_027038586.2 → XP_026894387.1  chondroitin sulfate proteoglycan 5 isoform X3

    UniProtKB/TrEMBL
    A0A6J1XPD1
    Conserved Domains (2) summary
    pfam06567
    Location:453 → 492
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
    pfam06566
    Location:38 → 278
    Chon_Sulph_att; Chondroitin sulphate attachment domain

  3. XM_027038584.2 → XP_026894385.1  chondroitin sulfate proteoglycan 5 isoform X1

    UniProtKB/TrEMBL
    A0A6J1XPL6
    Conserved Domains (2) summary
    pfam06567
    Location:453 → 544
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
    pfam06566
    Location:38 → 278
    Chon_Sulph_att; Chondroitin sulphate attachment domain
Nucleotide Protein
Heading Accession and Version

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