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PPFIA2 PTPRF interacting protein alpha 2 [ Acinonyx jubatus (cheetah) ]

Gene ID: 106967404, updated on 13-Mar-2024

Summary

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Gene symbol
PPFIA2
Gene description
PTPRF interacting protein alpha 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Acinonyx jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Acinonychinae; Acinonyx
Orthologs
human mouse all
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Genomic context

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See PPFIA2 in Genome Data Viewer
Location:
chromosome: B4
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2023_04 current VMU_Ajub_asm_v1.0 (GCF_027475565.1) B4 NC_069387.1 (102289980..102762903, complement)

Chromosome B4 - NC_069387.1Genomic Context describing neighboring genes Neighboring gene KATNB1-like protein 1 Neighboring gene acyl-CoA synthetase short chain family member 3 Neighboring gene hsc70-interacting protein-like Neighboring gene 40S ribosomal protein S10-like Neighboring gene U6 spliceosomal RNA Neighboring gene methyltransferase like 25 Neighboring gene coiled-coil domain containing 59

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069387.1 Chromosome B4 Reference VMU_Ajub_asm_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
liprin-alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027475565.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VMU_Ajub_asm_v1.0

Genomic

  1. NC_069387.1 Reference VMU_Ajub_asm_v1.0

    Range
    102289980..102762903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053226534.1 → XP_053082509.1  liprin-alpha-2 isoform X1

    UniProtKB/TrEMBL
    A0A6J2ABT1

  2. XM_053226540.1 → XP_053082515.1  liprin-alpha-2 isoform X15

  3. XM_027071168.2 → XP_026926969.1  liprin-alpha-2 isoform X13

    UniProtKB/TrEMBL
    A0A6J2AEK5
    Conserved Domains (5) summary
    cd09562
    Location:877 → 947
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:995 → 1060
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1080 → 1151
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:183 → 515
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam05622
    Location:41 → 272
    HOOK; HOOK protein

  4. XM_027071167.2 → XP_026926968.1  liprin-alpha-2 isoform X9

    UniProtKB/TrEMBL
    A0A6J2ABU6
    Conserved Domains (5) summary
    cd09562
    Location:877 → 947
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:1001 → 1066
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1086 → 1157
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:183 → 515
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam05622
    Location:41 → 272
    HOOK; HOOK protein

  5. XM_053226537.1 → XP_053082512.1  liprin-alpha-2 isoform X5

  6. XM_053226538.1 → XP_053082513.1  liprin-alpha-2 isoform X6

  7. XM_027071161.2 → XP_026926962.1  liprin-alpha-2 isoform X8

    UniProtKB/TrEMBL
    A0A6J2AAL4
    Conserved Domains (4) summary
    cd09562
    Location:895 → 965
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:1013 → 1078
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1098 → 1169
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:201 → 533
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  8. XM_027071160.2 → XP_026926961.1  liprin-alpha-2 isoform X7

    UniProtKB/TrEMBL
    A0A6J2AAX0
    Conserved Domains (4) summary
    cd09562
    Location:895 → 965
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:1019 → 1084
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1104 → 1175
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:201 → 533
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  9. XM_053226535.1 → XP_053082510.1  liprin-alpha-2 isoform X3

  10. XM_027071154.2 → XP_026926955.1  liprin-alpha-2 isoform X2

    UniProtKB/TrEMBL
    A0A6J2AF01
    Conserved Domains (5) summary
    cd09562
    Location:924 → 994
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:1042 → 1107
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1127 → 1198
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:201 → 562
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:39 → 345
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  11. XM_053226536.1 → XP_053082511.1  liprin-alpha-2 isoform X4

  12. XM_027071166.2 → XP_026926967.1  liprin-alpha-2 isoform X12

    UniProtKB/TrEMBL
    A0A6J2AAL9
    Conserved Domains (4) summary
    cd09562
    Location:796 → 866
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:914 → 979
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:999 → 1070
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:94 → 434
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  13. XM_053226539.1 → XP_053082514.1  liprin-alpha-2 isoform X10

  14. XM_015063655.3 → XP_014919141.2  liprin-alpha-2 isoform X14

    UniProtKB/TrEMBL
    A0A6I9ZIB1
    Conserved Domains (4) summary
    cd09562
    Location:821 → 891
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:939 → 1004
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1024 → 1095
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:127 → 459
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  15. XM_027071165.2 → XP_026926966.1  liprin-alpha-2 isoform X11

    UniProtKB/TrEMBL
    A0A6J2AAX5
    Conserved Domains (4) summary
    cd09562
    Location:821 → 891
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:945 → 1010
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1030 → 1101
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:127 → 459
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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