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lamb1a laminin, beta 1a [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106964973, updated on 13-Mar-2024

Summary

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Gene symbol
lamb1a
Gene description
laminin, beta 1a
See related
Ensembl:ENSPLAG00000017384
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
lamb1
Orthologs
human zebrafish all
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Genomic context

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See lamb1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015114360.1 (94964..123454)

NW_015114360.1Genomic Context describing neighboring genes Neighboring gene gamma-crystallin M3-like Neighboring gene uncharacterized LOC106964978 Neighboring gene laminin, beta 4 Neighboring gene charged multivesicular body protein 4b-like Neighboring gene cyclin-dependent kinase 10-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015114360.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in basement membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of laminin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit beta-1
Names
laminin subunit beta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015114360.1 Reference P_latipinna-1.0

    Range
    94964..123454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015060798.1 → XP_014916284.1  laminin subunit beta-1

    UniProtKB/TrEMBL
    A0A3B3VQX0
    Related
    ENSPLAP00000028195.1, ENSPLAT00000021933.1
    Conserved Domains (7) summary
    smart00180
    Location:781 → 826
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    COG1340
    Location:1454 → 1760
    COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
    cd00055
    Location:522 → 565
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    TIGR02101
    Location:1452 → 1616
    IpaC_SipC; type III secretion target, IpaC/SipC family
    pfam00053
    Location:829 → 877
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:56 → 283
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam05276
    Location:1572 → 1796
    SH3BP5; SH3 domain-binding protein 5 (SH3BP5)
Nucleotide Protein
Heading Accession and Version

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