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rabggta Rab geranylgeranyltransferase subunit alpha [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106963200, updated on 13-Mar-2024

Summary

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Gene symbol
rabggta
Gene description
Rab geranylgeranyltransferase subunit alpha
See related
Ensembl:ENSPLAG00000018840
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112679.1 (177319..193108, complement)

NW_015112679.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106963119 Neighboring gene protein-glutamine gamma-glutamyltransferase K-like Neighboring gene GTPase IMAP family member 8-like Neighboring gene capping protein regulator and myosin 1 linker 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112679.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Rab geranylgeranyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl transferase type-2 subunit alpha
Names
Rab geranylgeranyltransferase alpha subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112679.1 Reference P_latipinna-1.0

    Range
    177319..193108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015057995.1 → XP_014913481.1  geranylgeranyl transferase type-2 subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A3B3VW00
    Related
    ENSPLAP00000014836.1, ENSPLAT00000023305.1
    Conserved Domains (7) summary
    cd00116
    Location:365 → 565
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:461 → 479
    LRR_1; leucine-rich repeat [structural motif]
    sd00006
    Location:62 → 102
    TPR; TPR repeat [structural motif]
    pfam01239
    Location:163 → 188
    PPTA; Protein prenyltransferase alpha subunit repeat
    pfam07711
    Location:265 → 364
    RabGGT_insert; Rab geranylgeranyl transferase alpha-subunit, insert domain
    pfam12799
    Location:526 → 565
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:506 → 563
    LRR_8; Leucine rich repeat

  2. XM_015057984.1 → XP_014913470.1  geranylgeranyl transferase type-2 subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A3B3VW00
    Conserved Domains (7) summary
    cd00116
    Location:412 → 612
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:508 → 526
    LRR_1; leucine-rich repeat [structural motif]
    sd00006
    Location:109 → 149
    TPR; TPR repeat [structural motif]
    pfam01239
    Location:210 → 235
    PPTA; Protein prenyltransferase alpha subunit repeat
    pfam07711
    Location:312 → 411
    RabGGT_insert; Rab geranylgeranyl transferase alpha-subunit, insert domain
    pfam12799
    Location:573 → 612
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:553 → 610
    LRR_8; Leucine rich repeat

RNA

  1. XR_001428147.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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