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gtf2e1 general transcription factor IIE, polypeptide 1, alpha [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106959623, updated on 13-Mar-2024

Summary

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Gene symbol
gtf2e1
Gene description
general transcription factor IIE, polypeptide 1, alpha
See related
Ensembl:ENSPLAG00000015011
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See gtf2e1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015113718.1 (124170..132979, complement)

NW_015113718.1Genomic Context describing neighboring genes Neighboring gene syntaxin binding protein 5 like Neighboring gene uncharacterized LOC106959621 Neighboring gene polyserase-2-like Neighboring gene granzyme B-like Neighboring gene RAB, member of RAS oncogene family-like 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015113718.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription open complex formation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor IIE subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015113718.1 Reference P_latipinna-1.0

    Range
    124170..132979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015052330.1 → XP_014907816.1  general transcription factor IIE subunit 1

    UniProtKB/TrEMBL
    A0A3B3UGM4, A0A3B3UGR8
    Related
    ENSPLAP00000011807.1, ENSPLAT00000019324.1
    Conserved Domains (3) summary
    smart00531
    Location:29 → 169
    TFIIE; Transcription initiation factor IIE
    pfam02002
    Location:16 → 123
    TFIIE_alpha; TFIIE alpha subunit
    pfam11521
    Location:402 → 447
    TFIIE-A_C; C-terminal general transcription factor TFIIE alpha
Nucleotide Protein
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