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tril TLR4 interactor with leucine-rich repeats [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106945355, updated on 13-Mar-2024

Summary

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Gene symbol
tril
Gene description
TLR4 interactor with leucine-rich repeats
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See tril in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112757.1 (160187..164377)

NW_015112757.1Genomic Context describing neighboring genes Neighboring gene non-syndromic hearing impairment protein 5-like Neighboring gene oxysterol-binding protein-related protein 3-like Neighboring gene cAMP responsive element binding protein 5a Neighboring gene JAZF zinc finger 1a Neighboring gene Tax1 (human T-cell leukemia virus type I) binding protein 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112757.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TLR4 interactor with leucine rich repeats

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112757.1 Reference P_latipinna-1.0

    Range
    160187..164377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015028980.1 → XP_014884466.1  TLR4 interactor with leucine rich repeats

    UniProtKB/TrEMBL
    A0A3B3VYE9
    Conserved Domains (5) summary
    smart00060
    Location:602 → 676
    FN3; Fibronectin type 3 domain
    smart00082
    Location:361 → 409
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:103 → 247
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:42 → 63
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:159 → 218
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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