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hnf1a HNF1 homeobox a [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106944658, updated on 13-Mar-2024

Summary

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Gene symbol
hnf1a
Gene description
HNF1 homeobox a
See related
Ensembl:ENSPLAG00000014034
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112624.1 (357480..365173, complement)

NW_015112624.1Genomic Context describing neighboring genes Neighboring gene unc-119 homolog 1 Neighboring gene POP5 homolog, ribonuclease P/MRP subunit Neighboring gene chromosome unknown C12orf43 homolog Neighboring gene musashi RNA binding protein 1b Neighboring gene protein kinase, AMP-activated, beta 1 non-catalytic subunit, b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112624.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in insulin secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in liver development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pancreas development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 1-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112624.1 Reference P_latipinna-1.0

    Range
    357480..365173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015027787.1 → XP_014883273.1  hepatocyte nuclear factor 1-alpha

    UniProtKB/TrEMBL
    A0A3B3UEF3
    Related
    ENSPLAP00000011009.1, ENSPLAT00000018258.1
    Conserved Domains (4) summary
    cd00086
    Location:189 → 262
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04812
    Location:288 → 490
    HNF-1B_C; Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus
    pfam04813
    Location:492 → 561
    HNF-1A_C; Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
    pfam04814
    Location:20 → 158
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus
Nucleotide Protein
Heading Accession and Version

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