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kdm2a lysine demethylase 2A [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106942325, updated on 2-Nov-2023

Summary

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Gene symbol
kdm2a
Gene description
lysine demethylase 2A
See related
Ensembl:ENSPLAG00000020152
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015116807.1 (12375..26178)

NW_015116807.1Genomic Context describing neighboring genes Neighboring gene syntaxin-3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015116807.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015116807.1 Reference P_latipinna-1.0

    Range
    12375..26178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015025583.1 → XP_014881069.1  lysine-specific demethylase 2A isoform X1

    UniProtKB/TrEMBL
    A0A3B3UT51
    Related
    ENSPLAP00000016048.1, ENSPLAT00000024874.1
    Conserved Domains (7) summary
    cd09293
    Location:1113 → 1256
    AMN1; Antagonist of mitotic exit network protein 1
    smart00558
    Location:150 → 225
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02008
    Location:528 → 561
    zf-CXXC; CXXC zinc finger domain
    sd00034
    Location:1081 → 1105
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:1047 → 1087
    F-box-like; F-box-like
    pfam16866
    Location:566 → 626
    PHD_4; PHD-finger
    cl21464
    Location:197 → 297
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_015025584.1 → XP_014881070.1  lysine-specific demethylase 2A isoform X2

    Conserved Domains (7) summary
    cd09293
    Location:1111 → 1254
    AMN1; Antagonist of mitotic exit network protein 1
    smart00558
    Location:150 → 225
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02008
    Location:528 → 561
    zf-CXXC; CXXC zinc finger domain
    sd00034
    Location:1079 → 1103
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:1045 → 1085
    F-box-like; F-box-like
    pfam16866
    Location:566 → 626
    PHD_4; PHD-finger
    cl21464
    Location:197 → 297
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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