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sp2 sp2 transcription factor [ Poecilia mexicana ]

Gene ID: 106930244, updated on 13-Mar-2024

Summary

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Gene symbol
sp2
Gene description
sp2 transcription factor
See related
Ensembl:ENSPMEG00000005000
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015095730.1 (100231..124550)

NW_015095730.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 179 Neighboring gene suppressor of cytokine signaling 7 Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 10 Neighboring gene neuroblast differentiation-associated protein AHNAK-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015095730.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015095730.1 Reference P_mexicana-1.0

    Range
    100231..124550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015007677.1 → XP_014863163.1  transcription factor Sp2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3WLY4
    Related
    ENSPMEP00000003813.1, ENSPMET00000010248.1
    Conserved Domains (4) summary
    COG5048
    Location:530 → 611
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:525 → 547
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:583 → 605
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:569 → 592
    zf-H2C2_2; Zinc-finger double domain

  2. XM_015007678.1 → XP_014863164.1  transcription factor Sp2 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:529 → 610
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:524 → 546
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:582 → 604
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:568 → 591
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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