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cntnap1 contactin associated protein 1 [ Poecilia mexicana ]

Gene ID: 106917492, updated on 13-Mar-2024

Summary

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Gene symbol
cntnap1
Gene description
contactin associated protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094766.1 (534626..550923)

NW_015094766.1Genomic Context describing neighboring genes Neighboring gene tubulin, gamma 1 Neighboring gene pleckstrin homology, MyTH4 and FERM domain containing H3 Neighboring gene enhancer of zeste 1 polycomb repressive complex 2 subunit Neighboring gene receptor (G protein-coupled) activity modifying protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094766.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
contactin-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094766.1 Reference P_mexicana-1.0

    Range
    534626..550923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014986513.1 → XP_014841999.1  contactin-associated protein 1

    UniProtKB/TrEMBL
    A0A3B3YR26
    Conserved Domains (6) summary
    smart00231
    Location:22 → 168
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
    cd00057
    Location:27 → 167
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    cd00110
    Location:185 → 330
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:547 → 577
    EGF; EGF-like domain
    pfam02210
    Location:1049 → 1177
    Laminin_G_2; Laminin G domain
    cl00085
    Location:587 → 662
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein
Heading Accession and Version

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