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RNF168 ring finger protein 168 [ Calidris pugnax (ruff) ]

Gene ID: 106900836, updated on 13-Mar-2024

Summary

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Gene symbol
RNF168
Gene description
ring finger protein 168
See related
Ensembl:ENSCPUG00000013619
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015094503.1 (757602..766598, complement)

NW_015094503.1Genomic Context describing neighboring genes Neighboring gene neuraminidase 4 Neighboring gene transmembrane 4 L six family member 19 Neighboring gene UBX domain protein 7 Neighboring gene WD repeat domain 53 Neighboring gene F-box protein 45 Neighboring gene uncharacterized LOC106900812

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094503.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF168

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015094503.1 Reference ASM143184v1

    Range
    757602..766598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014963036.1 → XP_014818522.1  E3 ubiquitin-protein ligase RNF168

    Related
    ENSCPUP00000019886.1, ENSCPUT00000023572.1
    Conserved Domains (1) summary
    cd00162
    Location:16 → 58
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

  2. XM_014963032.1 → XP_014818518.1  E3 ubiquitin-protein ligase RNF168

    Related
    ENSCPUP00000019885.1, ENSCPUT00000023571.1
    Conserved Domains (1) summary
    cd00162
    Location:16 → 58
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

  3. XM_014963033.1 → XP_014818519.1  E3 ubiquitin-protein ligase RNF168

    Conserved Domains (1) summary
    cd00162
    Location:16 → 58
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

  4. XM_014963035.1 → XP_014818521.1  E3 ubiquitin-protein ligase RNF168

    Conserved Domains (1) summary
    cd00162
    Location:16 → 58
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

  5. XM_014963034.1 → XP_014818520.1  E3 ubiquitin-protein ligase RNF168

    Conserved Domains (1) summary
    cd00162
    Location:16 → 58
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
Heading Accession and Version

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