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SCARA5 scavenger receptor class A member 5 [ Calidris pugnax (ruff) ]

Gene ID: 106900658, updated on 13-Mar-2024

Summary

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Gene symbol
SCARA5
Gene description
scavenger receptor class A member 5
See related
Ensembl:ENSCPUG00000013086
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015093088.1 (24218..58991)

NW_015093088.1Genomic Context describing neighboring genes Neighboring gene L-gulonolactone oxidase-like Neighboring gene PDZ binding kinase Neighboring gene establishment of sister chromatid cohesion N-acetyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015093088.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ferritin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in iron ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scavenger receptor class A member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015093088.1 Reference ASM143184v1

    Range
    24218..58991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014962791.1 → XP_014818277.1  scavenger receptor class A member 5 isoform X1

    Related
    ENSCPUP00000018994.1, ENSCPUT00000022561.1
    Conserved Domains (3) summary
    pfam01391
    Location:321 → 378
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:390 → 490
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:395 → 489
    SRCR; Scavenger receptor cysteine-rich domain

  2. XM_014962792.1 → XP_014818278.1  scavenger receptor class A member 5 isoform X2

    Conserved Domains (3) summary
    pfam01391
    Location:321 → 378
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:389 → 489
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:394 → 488
    SRCR; Scavenger receptor cysteine-rich domain
Nucleotide Protein
Heading Accession and Version

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