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SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [ Calidris pugnax (ruff) ]

Gene ID: 106896427, updated on 13-Mar-2024

Summary

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Gene symbol
SVEP1
Gene description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
See related
Ensembl:ENSCPUG00000013726
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
50
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015091043.1 (1222663..1354558, complement)

NW_015091043.1Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes 2 Neighboring gene prostaglandin reductase 1 Neighboring gene thioredoxin Neighboring gene muscle associated receptor tyrosine kinase Neighboring gene lysophosphatidic acid receptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015091043.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015091043.1 Reference ASM143184v1

    Range
    1222663..1354558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014956427.1 → XP_014811913.1  sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1

    Related
    ENSCPUP00000020054.1, ENSCPUT00000023757.1
    Conserved Domains (12) summary
    cd00033
    Location:2499 → 2553
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:1692 → 1745
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:2768 → 3001
    PHA02927; secreted complement-binding protein; Provisional
    cd00054
    Location:1271 → 1307
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:1199 → 1227
    EGF; EGF-like domain
    pfam00084
    Location:3239 → 3292
    Sushi; Sushi repeat (SCR repeat)
    pfam00092
    Location:78 → 252
    VWA; von Willebrand factor type A domain
    pfam02494
    Location:554 → 636
    HYR; HYR domain
    pfam07699
    Location:1060 → 1107
    GCC2_GCC3; GCC2 and GCC3
    pfam12947
    Location:1751 → 1785
    EGF_3; EGF domain
    cl03620
    Location:637 → 716
    DUF5011; Domain of unknown function (DUF5011)
    cl22861
    Location:1426 → 1624
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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