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SLC3A1 solute carrier family 3 member 1 [ Calidris pugnax (ruff) ]

Gene ID: 106893236, updated on 13-Mar-2024

Summary

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Gene symbol
SLC3A1
Gene description
solute carrier family 3 member 1
See related
Ensembl:ENSCPUG00000001410
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090922.1 (11100224..11116088)

NW_015090922.1Genomic Context describing neighboring genes Neighboring gene leucine rich pentatricopeptide repeat containing Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1B Neighboring gene prolyl endopeptidase like Neighboring gene calmodulin-lysine N-methyltransferase Neighboring gene uncharacterized LOC106892988

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090922.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neutral and basic amino acid transport protein rBAT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090922.1 Reference ASM143184v1

    Range
    11100224..11116088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014951052.1 → XP_014806538.1  neutral and basic amino acid transport protein rBAT

    Related
    ENSCPUP00000001819.1, ENSCPUT00000002196.1
    Conserved Domains (3) summary
    cd11359
    Location:103 → 550
    AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
    TIGR02403
    Location:104 → 589
    trehalose_treC; alpha,alpha-phosphotrehalase
    pfam16028
    Location:52 → 110
    SLC3A2_N; Solute carrier family 3 member 2 N-terminus
Nucleotide Protein
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