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SFMBT2 Scm like with four mbt domains 2 [ Calidris pugnax (ruff) ]

Gene ID: 106892144, updated on 13-Mar-2024

Summary

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Gene symbol
SFMBT2
Gene description
Scm like with four mbt domains 2
See related
Ensembl:ENSCPUG00000013780
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090906.1 (3949298..4137543)

NW_015090906.1Genomic Context describing neighboring genes Neighboring gene inter-alpha-trypsin inhibitor heavy chain 5 Neighboring gene store-operated calcium entry regulator STIMATE-like Neighboring gene protein kinase C theta Neighboring gene uncharacterized LOC106892129

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090906.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scm-like with four MBT domains protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090906.1 Reference ASM143184v1

    Range
    3949298..4137543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014949114.1 → XP_014804600.1  scm-like with four MBT domains protein 2

    Related
    ENSCPUP00000020145.1, ENSCPUT00000023855.1
    Conserved Domains (4) summary
    cd09581
    Location:814 → 893
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00454
    Location:820 → 884
    SAM; Sterile alpha motif
    smart00561
    Location:49 → 146
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:530 → 645
    DUF3588; Protein of unknown function (DUF3588)
Nucleotide Protein
Heading Accession and Version

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