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GOT2 glutamic-oxaloacetic transaminase 2 [ Calidris pugnax (ruff) ]

Gene ID: 106891941, updated on 13-Mar-2024

Summary

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Gene symbol
GOT2
Gene description
glutamic-oxaloacetic transaminase 2
See related
Ensembl:ENSCPUG00000010618
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090776.1 (5351142..5366081, complement)

NW_015090776.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 1 Neighboring gene solute carrier family 38 member 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090776.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-aspartate:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aspartate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartate aminotransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090776.1 Reference ASM143184v1

    Range
    5351142..5366081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014948775.1 → XP_014804261.1  aspartate aminotransferase, mitochondrial isoform X1

    Related
    ENSCPUP00000015231.1, ENSCPUT00000018065.1
    Conserved Domains (2) summary
    PLN02397
    Location:50 → 450
    PLN02397; aspartate transaminase
    pfam00155
    Location:77 → 445
    Aminotran_1_2; Aminotransferase class I and II

  2. XM_014948786.1 → XP_014804272.1  aspartate aminotransferase, mitochondrial isoform X2

    Conserved Domains (2) summary
    PLN02397
    Location:1 → 393
    PLN02397; aspartate transaminase
    pfam00155
    Location:20 → 388
    Aminotran_1_2; Aminotransferase class I and II

RNA

  1. XR_001412800.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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