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ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 [ Calidris pugnax (ruff) ]

Gene ID: 106890773, updated on 13-Mar-2024

Summary

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Gene symbol
ADAMTS9
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 9
See related
Ensembl:ENSCPUG00000019598
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
41
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090880.1 (8212856..8300716)

NW_015090880.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106890728 Neighboring gene uncharacterized LOC106890717 Neighboring gene prickle planar cell polarity protein 2 Neighboring gene proteasome 26S subunit, non-ATPase 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090880.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090880.1 Reference ASM143184v1

    Range
    8212856..8300716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014946783.1 → XP_014802269.1  A disintegrin and metalloproteinase with thrombospondin motifs 9 isoform X1

    Conserved Domains (6) summary
    smart00209
    Location:587 → 639
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:286 → 491
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:286 → 494
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:92 → 200
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:749 → 867
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08685
    Location:1740 → 1935
    GON; GON domain

  2. XM_014946785.1 → XP_014802271.1  A disintegrin and metalloproteinase with thrombospondin motifs 9 isoform X3

    Conserved Domains (6) summary
    smart00209
    Location:587 → 639
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:286 → 491
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:286 → 494
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:92 → 200
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:749 → 867
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08685
    Location:1684 → 1879
    GON; GON domain

  3. XM_014946784.1 → XP_014802270.1  A disintegrin and metalloproteinase with thrombospondin motifs 9 isoform X2

    Related
    ENSCPUP00000029233.1, ENSCPUT00000034421.1
    Conserved Domains (6) summary
    smart00209
    Location:586 → 638
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:286 → 491
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:286 → 494
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:92 → 200
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:748 → 866
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08685
    Location:1739 → 1934
    GON; GON domain

  4. XM_014946786.1 → XP_014802272.1  A disintegrin and metalloproteinase with thrombospondin motifs 9 isoform X4

    Conserved Domains (5) summary
    smart00209
    Location:341 → 393
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:40 → 245
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:40 → 248
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam05986
    Location:503 → 621
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08685
    Location:1494 → 1689
    GON; GON domain

RNA

  1. XR_001412577.1 RNA Sequence

  2. XR_001412578.1 RNA Sequence

Nucleotide Protein
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