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NOP56 NOP56 ribonucleoprotein [ Calidris pugnax (ruff) ]

Gene ID: 106889165, updated on 11-Apr-2024

Summary

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Gene symbol
NOP56
Gene description
NOP56 ribonucleoprotein
See related
Ensembl:ENSCPUG00000004188
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090774.1 (50963..54651, complement)

NW_015090774.1Genomic Context describing neighboring genes Neighboring gene VPS16 core subunit of CORVET and HOPS complexes Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta Neighboring gene dynactin subunit 1 Neighboring gene uncharacterized LOC106889172 Neighboring gene uncharacterized LOC106888759 Neighboring gene retinol dehydrogenase 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090774.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar protein 56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090774.1 Reference ASM143184v1

    Range
    50963..54651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014943953.1 → XP_014799439.1  nucleolar protein 56

    Related
    ENSCPUP00000005727.1, ENSCPUT00000006954.1
    Conserved Domains (2) summary
    smart00931
    Location:85 → 136
    NOSIC; NOSIC (NUC001) domain
    pfam01798
    Location:91 → 322
    Nop; snoRNA binding domain, fibrillarin
Nucleotide Protein
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