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SEC22B SEC22 homolog B, vesicle trafficking protein [ Calidris pugnax (ruff) ]

Gene ID: 106888959, updated on 13-Mar-2024

Summary

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Gene symbol
SEC22B
Gene description
SEC22 homolog B, vesicle trafficking protein
See related
Ensembl:ENSCPUG00000000756
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090852.1 (4566465..4575391, complement)

NW_015090852.1Genomic Context describing neighboring genes Neighboring gene notch receptor 2 Neighboring gene regenerating family member 4 Neighboring gene phosphofurin acidic cluster sorting protein 2 Neighboring gene metastasis associated 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090852.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion with Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-trafficking protein SEC22b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090852.1 Reference ASM143184v1

    Range
    4566465..4575391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014943566.1 → XP_014799052.1  vesicle-trafficking protein SEC22b

    Related
    ENSCPUP00000000973.1, ENSCPUT00000001192.1
    Conserved Domains (2) summary
    cd15866
    Location:132 → 195
    R-SNARE_SEC22; SNARE motif of SEC22
    cd14824
    Location:3 → 126
    Longin; longin domain
Nucleotide Protein
Heading Accession and Version

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