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THBS1 thrombospondin 1 [ Calidris pugnax (ruff) ]

Gene ID: 106888019, updated on 13-Mar-2024

Summary

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Gene symbol
THBS1
Gene description
thrombospondin 1
See related
Ensembl:ENSCPUG00000007512
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090839.1 (14868425..14884198)

NW_015090839.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106887887 Neighboring gene uncharacterized LOC106887886 Neighboring gene katanin regulatory subunit B1 like 1 Neighboring gene fibrous sheath interacting protein 1 Neighboring gene uncharacterized LOC106887848

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090839.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090839.1 Reference ASM143184v1

    Range
    14868425..14884198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014941967.1 → XP_014797453.1  thrombospondin-1

    Related
    ENSCPUP00000010582.1, ENSCPUT00000012619.1
    Conserved Domains (10) summary
    smart00209
    Location:444 → 496
    TSP1; Thrombospondin type 1 repeats
    smart00210
    Location:27 → 227
    TSPN; Thrombospondin N-terminal -like domains
    sd00001
    Location:851 → 888
    TSP3; TSP3 repeat_long [structural motif]
    sd00002
    Location:793 → 827
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:697 → 732
    TSP3_1C; TSP3 repeat_1C [structural motif]
    pfam00090
    Location:389 → 434
    TSP_1; Thrombospondin type 1 domain
    pfam00093
    Location:324 → 378
    VWC; von Willebrand factor type C domain
    pfam02412
    Location:852 → 888
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:978 → 1175
    TSP_C; Thrombospondin C-terminal region
    pfam12947
    Location:656 → 695
    EGF_3; EGF domain
Nucleotide Protein
Heading Accession and Version

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