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MUTYH mutY DNA glycosylase [ Calidris pugnax (ruff) ]

Gene ID: 106886253, updated on 13-Mar-2024

Summary

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Gene symbol
MUTYH
Gene description
mutY DNA glycosylase
See related
Ensembl:ENSCPUG00000011962
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090812.1 (9077928..9083260)

NW_015090812.1Genomic Context describing neighboring genes Neighboring gene hyphal wall protein 1-like Neighboring gene testis associated actin remodelling kinase 2 Neighboring gene target of EGR1, exonuclease Neighboring gene selenoprotein Pb-like Neighboring gene 4-hydroxyphenylpyruvate dioxygenase like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090812.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables adenine/guanine mispair binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidized purine DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables purine-specific mismatch base pair DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A/G-specific adenine DNA glycosylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090812.1 Reference ASM143184v1

    Range
    9077928..9083260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014939011.1 → XP_014794497.1  A/G-specific adenine DNA glycosylase

    Related
    ENSCPUP00000017382.1, ENSCPUT00000020596.1
    Conserved Domains (4) summary
    smart00525
    Location:205 → 225
    FES; iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3)
    COG0177
    Location:32 → 230
    Nth; Endonuclease III [Replication, recombination and repair]
    cd00056
    Location:44 → 202
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
    cd03431
    Location:286 → 418
    DNA_Glycosylase_C; DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important ...
Nucleotide Protein
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