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FUBP1 far upstream element binding protein 1 [ Calidris pugnax (ruff) ]

Gene ID: 106886236, updated on 13-Mar-2024

Summary

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Gene symbol
FUBP1
Gene description
far upstream element binding protein 1
See related
Ensembl:ENSCPUG00000003195
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090812.1 (11673352..11710314, complement)

NW_015090812.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 33 Neighboring gene mitoguardin 1 Neighboring gene nexilin F-actin binding protein Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene GIPC PDZ domain containing family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090812.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
far upstream element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090812.1 Reference ASM143184v1

    Range
    11673352..11710314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014938972.1 → XP_014794458.1  far upstream element-binding protein 1 isoform X6

    Conserved Domains (3) summary
    smart00322
    Location:383 → 449
    KH; K homology RNA-binding domain
    cd00105
    Location:120 → 182
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:611 → 625
    DUF1897; Domain of unknown function (DUF1897)

  2. XM_014938968.1 → XP_014794454.1  far upstream element-binding protein 1 isoform X2

    Conserved Domains (2) summary
    cd00105
    Location:120 → 182
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:627 → 641
    DUF1897; Domain of unknown function (DUF1897)

  3. XM_014938979.1 → XP_014794465.1  far upstream element-binding protein 1 isoform X11

    Conserved Domains (2) summary
    cd00105
    Location:99 → 161
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:590 → 604
    DUF1897; Domain of unknown function (DUF1897)

  4. XM_014938967.1 → XP_014794453.1  far upstream element-binding protein 1 isoform X1

    Conserved Domains (2) summary
    cd00105
    Location:120 → 182
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:627 → 641
    DUF1897; Domain of unknown function (DUF1897)

  5. XM_014938975.1 → XP_014794461.1  far upstream element-binding protein 1 isoform X9

    Related
    ENSCPUP00000004289.1, ENSCPUT00000005185.1
    Conserved Domains (2) summary
    cd00105
    Location:99 → 161
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:606 → 620
    DUF1897; Domain of unknown function (DUF1897)

  6. XM_014938974.1 → XP_014794460.1  far upstream element-binding protein 1 isoform X8

    Conserved Domains (2) summary
    cd00105
    Location:99 → 161
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:606 → 620
    DUF1897; Domain of unknown function (DUF1897)

  7. XM_014938981.1 → XP_014794467.1  far upstream element-binding protein 1 isoform X13

    Conserved Domains (2) summary
    cd00105
    Location:101 → 163
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:608 → 622
    DUF1897; Domain of unknown function (DUF1897)

  8. XM_014938976.1 → XP_014794462.1  far upstream element-binding protein 1 isoform X10

    Conserved Domains (5) summary
    pfam09005
    Location:606 → 620
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:95 → 169
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:183 → 252
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:273 → 340
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:373 → 444
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  9. XM_014938970.1 → XP_014794456.1  far upstream element-binding protein 1 isoform X4

    Conserved Domains (3) summary
    cd00105
    Location:120 → 182
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:399 → 463
    KH_1; KH domain
    pfam09005
    Location:627 → 641
    DUF1897; Domain of unknown function (DUF1897)

  10. XM_014938969.1 → XP_014794455.1  far upstream element-binding protein 1 isoform X3

    Conserved Domains (2) summary
    cd00105
    Location:120 → 182
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:627 → 641
    DUF1897; Domain of unknown function (DUF1897)

  11. XM_014938971.1 → XP_014794457.1  far upstream element-binding protein 1 isoform X5

    Conserved Domains (5) summary
    pfam09005
    Location:627 → 641
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:116 → 190
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:204 → 273
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:294 → 361
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:394 → 465
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  12. XM_014938973.1 → XP_014794459.1  far upstream element-binding protein 1 isoform X7

    Conserved Domains (5) summary
    pfam09005
    Location:627 → 641
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:116 → 190
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:204 → 273
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:294 → 361
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:394 → 465
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  13. XM_014938980.1 → XP_014794466.1  far upstream element-binding protein 1 isoform X12

    Related
    ENSCPUP00000004304.1, ENSCPUT00000005201.1
    Conserved Domains (5) summary
    pfam09005
    Location:590 → 604
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:95 → 169
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:183 → 252
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:257 → 324
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:357 → 428
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

RNA

  1. XR_001411613.1 RNA Sequence

  2. XR_001411612.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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