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KDM6A lysine demethylase 6A [ Calidris pugnax (ruff) ]

Gene ID: 106885700, updated on 13-Mar-2024

Summary

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Gene symbol
KDM6A
Gene description
lysine demethylase 6A
See related
Ensembl:ENSCPUG00000011684
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090805.1 (1604851..1736108)

NW_015090805.1Genomic Context describing neighboring genes Neighboring gene EF-hand domain containing 2 Neighboring gene FUN14 domain containing 1 Neighboring gene divergent protein kinase domain 2B Neighboring gene uncharacterized LOC106885630

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090805.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K27me2/H3K27me3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MLL3/4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 6A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090805.1 Reference ASM143184v1

    Range
    1604851..1736108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014938080.1 → XP_014793566.1  lysine-specific demethylase 6A isoform X1

    Conserved Domains (6) summary
    pfam02373
    Location:1032 → 1140
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:998 → 1062
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:1 → 272
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:132 → 159
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:165 → 198
    TPR_1; Tetratricopeptide repeat
    pfam13431
    Location:119 → 150
    TPR_17; Tetratricopeptide repeat

  2. XM_014938081.1 → XP_014793567.1  lysine-specific demethylase 6A isoform X1

    Related
    ENSCPUP00000016933.1, ENSCPUT00000020059.1
    Conserved Domains (6) summary
    pfam02373
    Location:1032 → 1140
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:998 → 1062
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:1 → 272
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:132 → 159
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:165 → 198
    TPR_1; Tetratricopeptide repeat
    pfam13431
    Location:119 → 150
    TPR_17; Tetratricopeptide repeat

  3. XM_014938082.1 → XP_014793568.1  lysine-specific demethylase 6A isoform X2

    Conserved Domains (6) summary
    pfam02373
    Location:1032 → 1140
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:998 → 1062
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:1 → 272
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:132 → 159
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:165 → 198
    TPR_1; Tetratricopeptide repeat
    pfam13431
    Location:119 → 150
    TPR_17; Tetratricopeptide repeat

  4. XM_014938089.1 → XP_014793575.1  lysine-specific demethylase 6A isoform X8

    Conserved Domains (8) summary
    pfam02373
    Location:935 → 1043
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:901 → 965
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:7 → 162
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:132 → 159
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:165 → 198
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:164 → 225
    TPR_11; TPR repeat
    pfam13424
    Location:127 → 195
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:119 → 150
    TPR_17; Tetratricopeptide repeat

  5. XM_014938083.1 → XP_014793569.1  lysine-specific demethylase 6A isoform X3

    Conserved Domains (7) summary
    pfam02373
    Location:1010 → 1118
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:976 → 1040
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 176
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:142 → 203
    TPR_11; TPR repeat
    pfam13424
    Location:30 → 107
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:97 → 128
    TPR_17; Tetratricopeptide repeat

  6. XM_014938084.1 → XP_014793570.1  lysine-specific demethylase 6A isoform X4

    Related
    ENSCPUP00000016937.1, ENSCPUT00000020063.1
    Conserved Domains (7) summary
    pfam02373
    Location:1010 → 1118
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:976 → 1040
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 176
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:142 → 203
    TPR_11; TPR repeat
    pfam13424
    Location:30 → 107
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:97 → 128
    TPR_17; Tetratricopeptide repeat

  7. XM_014938087.1 → XP_014793573.1  lysine-specific demethylase 6A isoform X7

    Related
    ENSCPUP00000016943.1, ENSCPUT00000020069.1
    Conserved Domains (7) summary
    pfam02373
    Location:958 → 1066
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:924 → 988
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 176
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:142 → 203
    TPR_11; TPR repeat
    pfam13424
    Location:30 → 107
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:97 → 128
    TPR_17; Tetratricopeptide repeat

  8. XM_014938085.1 → XP_014793571.1  lysine-specific demethylase 6A isoform X5

    Conserved Domains (7) summary
    pfam02373
    Location:965 → 1073
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:931 → 995
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 176
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:142 → 203
    TPR_11; TPR repeat
    pfam13424
    Location:30 → 107
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:97 → 128
    TPR_17; Tetratricopeptide repeat

  9. XM_014938086.1 → XP_014793572.1  lysine-specific demethylase 6A isoform X6

    Related
    ENSCPUP00000016940.1, ENSCPUT00000020066.1
    Conserved Domains (7) summary
    pfam02373
    Location:965 → 1073
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:931 → 995
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 176
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:142 → 203
    TPR_11; TPR repeat
    pfam13424
    Location:30 → 107
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:97 → 128
    TPR_17; Tetratricopeptide repeat

  10. XM_014938090.1 → XP_014793576.1  lysine-specific demethylase 6A isoform X9

    Related
    ENSCPUP00000016945.1, ENSCPUT00000020071.1
    Conserved Domains (7) summary
    pfam02373
    Location:913 → 1021
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:879 → 943
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 176
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:142 → 203
    TPR_11; TPR repeat
    pfam13424
    Location:30 → 107
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:97 → 128
    TPR_17; Tetratricopeptide repeat

RNA

  1. XR_001411479.1 RNA Sequence

  2. XR_001411481.1 RNA Sequence

  3. XR_001411483.1 RNA Sequence

  4. XR_001411482.1 RNA Sequence

  5. XR_001411486.1 RNA Sequence

  6. XR_001411480.1 RNA Sequence

  7. XR_001411485.1 RNA Sequence

  8. XR_001411484.1 RNA Sequence

  9. XR_001411487.1 RNA Sequence

  10. XR_001411488.1 RNA Sequence

Nucleotide Protein
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