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ligC ATP-dependent DNA ligase LigC [ Mycobacterium sp. JDM601 ]

Gene ID: 10686060, updated on 6-Jul-2014
Gene symbol
ligC
Gene description
ATP-dependent DNA ligase LigC
Locus tag
JDM601_4023
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mycobacterium sp. JDM601 (strain: JDM601)
Lineage
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium
Sequence:
NC_015576.1 (4275207..4276259, complement)

NC_015576.1Genomic Context describing neighboring genes Neighboring gene transcriptional regulator Neighboring gene peptidase M48 like-protein Neighboring gene hypothetical protein Neighboring gene haloalkane dehalogenase Neighboring gene hypothetical protein

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_015576.1 

    Range
    4275207..4276259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004525277.1 ATP-dependent DNA ligase LigC [Mycobacterium sp. JDM601]

    See proteins identical to YP_004525277.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F5YT34
    Conserved Domains (3) summary
    cd07970
    Location:215333
    OBF_DNA_ligase_LigC; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit
    cd07905
    Location:18215
    Adenylation_DNA_ligase_LigC; Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases
    PRK08224
    Location:10350
    ligC; ATP-dependent DNA ligase; Reviewed