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PTPN13 protein tyrosine phosphatase non-receptor type 13 [ Sturnus vulgaris (Common starling) ]

Gene ID: 106855709, updated on 13-Mar-2024

Summary

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Gene symbol
PTPN13
Gene description
protein tyrosine phosphatase non-receptor type 13
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
50
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650583.1 (768849..879784)

NW_014650583.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 24 Neighboring gene mitogen-activated protein kinase 10 Neighboring gene ALF transcription elongation factor 1 Neighboring gene uncharacterized LOC106855699

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650583.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol 3-kinase regulatory subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine-protein phosphatase non-receptor type 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650583.1 Reference Sturnus_vulgaris-1.0

    Range
    768849..879784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014880584.1 → XP_014736070.1  tyrosine-protein phosphatase non-receptor type 13 isoform X1

    Conserved Domains (10) summary
    smart00194
    Location:2253 → 2505
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00228
    Location:1508 → 1599
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:574 → 782
    B41; Band 4.1 homologues
    smart00750
    Location:3 → 186
    KIND; kinase non-catalytic C-lobe domain
    cd00047
    Location:2279 → 2505
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00992
    Location:1793 → 1872
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00373
    Location:669 → 782
    FERM_M; FERM central domain
    pfam09379
    Location:577 → 639
    FERM_N; FERM N-terminal domain
    pfam16599
    Location:1181 → 1371
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl17171
    Location:778 → 878
    PH-like; Pleckstrin homology-like domain

  2. XM_014880585.1 → XP_014736071.1  tyrosine-protein phosphatase non-receptor type 13 isoform X2

    Conserved Domains (10) summary
    smart00194
    Location:2252 → 2504
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00228
    Location:1508 → 1599
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:574 → 782
    B41; Band 4.1 homologues
    smart00750
    Location:3 → 186
    KIND; kinase non-catalytic C-lobe domain
    cd00047
    Location:2278 → 2504
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00992
    Location:1793 → 1872
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00373
    Location:669 → 782
    FERM_M; FERM central domain
    pfam09379
    Location:577 → 639
    FERM_N; FERM N-terminal domain
    pfam16599
    Location:1181 → 1371
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl17171
    Location:778 → 878
    PH-like; Pleckstrin homology-like domain

  3. XM_014880586.1 → XP_014736072.1  tyrosine-protein phosphatase non-receptor type 13 isoform X3

    Conserved Domains (10) summary
    smart00194
    Location:2248 → 2500
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00228
    Location:1503 → 1594
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:574 → 782
    B41; Band 4.1 homologues
    smart00750
    Location:3 → 186
    KIND; kinase non-catalytic C-lobe domain
    cd00047
    Location:2274 → 2500
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00992
    Location:1788 → 1867
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00373
    Location:669 → 782
    FERM_M; FERM central domain
    pfam09379
    Location:577 → 639
    FERM_N; FERM N-terminal domain
    pfam16599
    Location:1181 → 1371
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl17171
    Location:778 → 878
    PH-like; Pleckstrin homology-like domain

  4. XM_014880587.1 → XP_014736073.1  tyrosine-protein phosphatase non-receptor type 13 isoform X4

    Conserved Domains (10) summary
    smart00194
    Location:2221 → 2473
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00228
    Location:1476 → 1567
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:542 → 750
    B41; Band 4.1 homologues
    smart00750
    Location:3 → 186
    KIND; kinase non-catalytic C-lobe domain
    cd00047
    Location:2247 → 2473
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00992
    Location:1761 → 1840
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00373
    Location:637 → 750
    FERM_M; FERM central domain
    pfam09379
    Location:545 → 607
    FERM_N; FERM N-terminal domain
    pfam16599
    Location:1149 → 1339
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl17171
    Location:746 → 846
    PH-like; Pleckstrin homology-like domain

  5. XM_014880588.1 → XP_014736074.1  tyrosine-protein phosphatase non-receptor type 13 isoform X5

    Conserved Domains (9) summary
    smart00194
    Location:2014 → 2266
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00228
    Location:1269 → 1360
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:335 → 543
    B41; Band 4.1 homologues
    cd00047
    Location:2040 → 2266
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00992
    Location:1554 → 1633
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00373
    Location:430 → 543
    FERM_M; FERM central domain
    pfam09379
    Location:338 → 400
    FERM_N; FERM N-terminal domain
    pfam16599
    Location:942 → 1132
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl17171
    Location:539 → 639
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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