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LHX6 LIM homeobox 6 [ Sturnus vulgaris (Common starling) ]

Gene ID: 106855366, updated on 13-Mar-2024

Summary

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Gene symbol
LHX6
Gene description
LIM homeobox 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650575.1 (1646478..1660733)

NW_014650575.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosome recycling factor Neighboring gene RNA binding motif protein 18 Neighboring gene MORN repeat containing 5 Neighboring gene NADH:ubiquinone oxidoreductase subunit A8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650575.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in forebrain neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM/homeobox protein Lhx6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650575.1 Reference Sturnus_vulgaris-1.0

    Range
    1646478..1660733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014879976.1 → XP_014735462.1  LIM/homeobox protein Lhx6

    Conserved Domains (3) summary
    cd09380
    Location:401 → 454
    LIM1_Lhx6; The first LIM domain of Lhx6
    cd09382
    Location:462 → 516
    LIM2_Lhx6; The second LIM domain of Lhx6
    smart00389
    Location:551 → 606
    HOX; Homeodomain
Nucleotide Protein
Heading Accession and Version

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