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TRIM55 tripartite motif containing 55 [ Sturnus vulgaris (Common starling) ]

Gene ID: 106851217, updated on 13-Mar-2024

Summary

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Gene symbol
TRIM55
Gene description
tripartite motif containing 55
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650511.1 (1161447..1195807, complement)

NW_014650511.1Genomic Context describing neighboring genes Neighboring gene ribosome biogenesis regulator 1 homolog Neighboring gene corticotropin releasing hormone Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene transfer RNA tyrosine (anticodon GUA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650511.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650511.1 Reference Sturnus_vulgaris-1.0

    Range
    1161447..1195807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014872998.1 → XP_014728484.1  tripartite motif-containing protein 55 isoform X2

    Conserved Domains (3) summary
    smart00336
    Location:128 → 168
    BBOX; B-Box-type zinc finger
    cd00162
    Location:33 → 92
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl23765
    Location:175 → 278
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  2. XM_014872997.1 → XP_014728483.1  tripartite motif-containing protein 55 isoform X1

    Conserved Domains (3) summary
    cd00162
    Location:33 → 92
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00643
    Location:126 → 168
    zf-B_box; B-box zinc finger
    cl23765
    Location:175 → 300
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
Nucleotide Protein
Heading Accession and Version

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