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CAPRIN2 caprin family member 2 [ Equus asinus (ass) ]

Gene ID: 106848686, updated on 13-Mar-2024

Summary

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Gene symbol
CAPRIN2
Gene description
caprin family member 2
See related
Ensembl:ENSEASG00005005997
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 8 NC_052184.1 (17357199..17398735, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638426.1 (320148..362581)

Chromosome 8 - NC_052184.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123287848 Neighboring gene importin 8 Neighboring gene uncharacterized LOC106848687 Neighboring gene 60S ribosomal protein L38-like Neighboring gene SIN3-HDAC complex associated factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caprin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052184.1 Reference ASM1607732v2

    Range
    17357199..17398735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014868771.2 → XP_014724257.2  caprin-2 isoform X6

    UniProtKB/TrEMBL
    A0A8C4LB03
    Conserved Domains (4) summary
    PTZ00449
    Location:387 → 678
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam05109
    Location:594 → 944
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl23878
    Location:936 → 1070
    C1q; C1q domain

  2. XM_044775290.1 → XP_044631225.1  caprin-2 isoform X8

    UniProtKB/TrEMBL
    A0A8C4LB03
    Related
    ENSEASP00005008447.2, ENSEAST00005009205.2
    Conserved Domains (3) summary
    PTZ00449
    Location:387 → 678
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cl23878
    Location:887 → 1021
    C1q; C1q domain

  3. XM_044775289.1 → XP_044631224.1  caprin-2 isoform X7

    UniProtKB/TrEMBL
    A0A8C4LB03
    Conserved Domains (3) summary
    PHA03247
    Location:409 → 777
    PHA03247; large tegument protein UL36; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cl23878
    Location:916 → 1050
    C1q; C1q domain

  4. XM_044775288.1 → XP_044631223.1  caprin-2 isoform X5

    UniProtKB/TrEMBL
    A0A9L0IIN8
    Related
    ENSEASP00005037635.1, ENSEAST00005065021.1
    Conserved Domains (3) summary
    PTZ00449
    Location:387 → 702
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cl23878
    Location:852 → 986
    C1q; C1q domain

  5. XM_044775287.1 → XP_044631222.1  caprin-2 isoform X4

    UniProtKB/TrEMBL
    A0A8C4LB03
    Conserved Domains (4) summary
    PTZ00449
    Location:387 → 678
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03307
    Location:588 → 894
    PHA03307; transcriptional regulator ICP4; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cl23878
    Location:875 → 1009
    C1q; C1q domain

  6. XM_044775286.1 → XP_044631221.1  caprin-2 isoform X3

    UniProtKB/TrEMBL
    A0A8C4LB03
    Conserved Domains (4) summary
    PTZ00449
    Location:387 → 678
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam05109
    Location:588 → 815
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl23878
    Location:934 → 1068
    C1q; C1q domain

  7. XM_044775284.1 → XP_044631219.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C4LB03
    Conserved Domains (4) summary
    PTZ00449
    Location:387 → 678
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03247
    Location:586 → 968
    PHA03247; large tegument protein UL36; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cl23878
    Location:935 → 1069
    C1q; C1q domain

  8. XM_044775285.1 → XP_044631220.1  caprin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C4LB03
    Conserved Domains (4) summary
    PTZ00449
    Location:387 → 678
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03247
    Location:586 → 968
    PHA03247; large tegument protein UL36; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cl23878
    Location:935 → 1069
    C1q; C1q domain

  9. XM_044775292.1 → XP_044631227.1  caprin-2 isoform X10

    Conserved Domains (3) summary
    PTZ00121
    Location:24 → 256
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:165 → 526
    PHA03247; large tegument protein UL36; Provisional
    cl23878
    Location:692 → 826
    C1q; C1q domain

  10. XM_044775295.1 → XP_044631230.1  caprin-2 isoform X13

    UniProtKB/TrEMBL
    A0A8C4LIC4, A0A8C4PIX8
    Related
    ENSEASP00005008446.2, ENSEAST00005009204.2
    Conserved Domains (3) summary
    PTZ00449
    Location:387 → 678
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam05109
    Location:588 → 816
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  11. XM_044775294.1 → XP_044631229.1  caprin-2 isoform X12

    UniProtKB/TrEMBL
    A0A8C4LIC4
    Conserved Domains (3) summary
    PTZ00121
    Location:268 → 500
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:387 → 643
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

  12. XM_044775293.1 → XP_044631228.1  caprin-2 isoform X11

    UniProtKB/TrEMBL
    A0A8C4LIC4
    Conserved Domains (3) summary
    PTZ00121
    Location:268 → 500
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:387 → 702
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

  13. XM_044775291.1 → XP_044631226.1  caprin-2 isoform X9

    UniProtKB/TrEMBL
    A0A8C4LIC4
    Conserved Domains (2) summary
    PHA03247
    Location:409 → 777
    PHA03247; large tegument protein UL36; Provisional
    COG0419
    Location:62 → 404
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

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