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ATXN1 ataxin 1 [ Equus asinus (ass) ]

Gene ID: 106847199, updated on 13-Mar-2024

Summary

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Gene symbol
ATXN1
Gene description
ataxin 1
See related
Ensembl:ENSEASG00005011799
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 7 NC_052183.1 (1613494..1997566)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638356.1 (77366..460936, complement)

Chromosome 7 - NC_052183.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123286798 Neighboring gene U6 spliceosomal RNA Neighboring gene guanosine monophosphate reductase Neighboring gene uncharacterized LOC123286799

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052183.1 Reference ASM1607732v2

    Range
    1613494..1997566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044773209.1 → XP_044629144.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8C4M3V1
    Conserved Domains (2) summary
    smart00536
    Location:567 → 682
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:393 → 439
    ATXN-1_C; Capicua transcriptional repressor modulator

  2. XM_044773207.1 → XP_044629142.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8C4M3V1
    Conserved Domains (2) summary
    smart00536
    Location:567 → 682
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:393 → 439
    ATXN-1_C; Capicua transcriptional repressor modulator

  3. XM_044773206.1 → XP_044629141.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8C4M3V1
    Conserved Domains (2) summary
    smart00536
    Location:567 → 682
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:393 → 439
    ATXN-1_C; Capicua transcriptional repressor modulator

  4. XM_044773208.1 → XP_044629143.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8C4M3V1
    Conserved Domains (2) summary
    smart00536
    Location:567 → 682
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:393 → 439
    ATXN-1_C; Capicua transcriptional repressor modulator

  5. XM_014866391.2 → XP_014721877.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8C4M3V1
    Conserved Domains (2) summary
    smart00536
    Location:567 → 682
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:393 → 439
    ATXN-1_C; Capicua transcriptional repressor modulator

  6. XM_014866394.2 → XP_014721880.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8C4M3V1
    Conserved Domains (2) summary
    smart00536
    Location:567 → 682
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:393 → 439
    ATXN-1_C; Capicua transcriptional repressor modulator

  7. XM_014866396.2 → XP_014721882.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8C4M3V1
    Related
    ENSEASP00005017036.1, ENSEAST00005018505.2
    Conserved Domains (2) summary
    smart00536
    Location:567 → 682
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:393 → 439
    ATXN-1_C; Capicua transcriptional repressor modulator

RNA

  1. XR_006529818.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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