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TTC17 tetratricopeptide repeat domain 17 [ Equus asinus (ass) ]

Gene ID: 106843963, updated on 13-Mar-2024

Summary

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Gene symbol
TTC17
Gene description
tetratricopeptide repeat domain 17
See related
Ensembl:ENSEASG00005014829
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
27
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 17 NC_052193.1 (33930672..34039145)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638247.1 (3770057..3879473)

Chromosome 17 - NC_052193.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123278069 Neighboring gene uncharacterized LOC123277999 Neighboring gene apoptosis inhibitor 5 Neighboring gene uncharacterized LOC123278020 Neighboring gene uncharacterized LOC123277987

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052193.1 Reference ASM1607732v2

    Range
    33930672..34039145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044750169.1 → XP_044606104.1  tetratricopeptide repeat protein 17 isoform X3

    UniProtKB/TrEMBL
    A0A8C4ME25
    Related
    ENSEASP00005021728.2, ENSEAST00005023575.2
    Conserved Domains (5) summary
    smart00028
    Location:298 → 328
    TPR; Tetratricopeptide repeats
    COG0457
    Location:563 → 718
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:621 → 647
    TPR; TPR repeat [structural motif]
    cd16269
    Location:379 → 390
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:319 → 410
    GBP_C; Guanylate-binding protein, C-terminal domain

  2. XM_044750168.1 → XP_044606103.1  tetratricopeptide repeat protein 17 isoform X2

    UniProtKB/TrEMBL
    A0A8C4M7P5
    Related
    ENSEASP00005021730.2, ENSEAST00005023577.2
    Conserved Domains (5) summary
    smart00028
    Location:298 → 328
    TPR; Tetratricopeptide repeats
    COG0457
    Location:563 → 718
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:621 → 647
    TPR; TPR repeat [structural motif]
    cd16269
    Location:379 → 390
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:319 → 410
    GBP_C; Guanylate-binding protein, C-terminal domain

  3. XM_014861236.2 → XP_014716722.2  tetratricopeptide repeat protein 17 isoform X1

    UniProtKB/TrEMBL
    A0A8C4PQ50
    Related
    ENSEASP00005021736.2, ENSEAST00005023583.2
    Conserved Domains (5) summary
    smart00028
    Location:298 → 328
    TPR; Tetratricopeptide repeats
    COG0457
    Location:563 → 718
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:621 → 647
    TPR; TPR repeat [structural motif]
    cd16269
    Location:379 → 390
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:319 → 410
    GBP_C; Guanylate-binding protein, C-terminal domain

  4. XM_044750170.1 → XP_044606105.1  tetratricopeptide repeat protein 17 isoform X4

    Conserved Domains (5) summary
    smart00028
    Location:68 → 98
    TPR; Tetratricopeptide repeats
    COG0457
    Location:379 → 488
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:391 → 417
    TPR; TPR repeat [structural motif]
    cd16269
    Location:149 → 160
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:89 → 180
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
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