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TPCN1 two pore segment channel 1 [ Equus asinus (ass) ]

Gene ID: 106842240, updated on 13-Mar-2024

Summary

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Gene symbol
TPCN1
Gene description
two pore segment channel 1
See related
Ensembl:ENSEASG00005009481
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
30
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 8 NC_052184.1 (43765921..43825581, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638181.1 (2390804..2450308, complement)

Chromosome 8 - NC_052184.1Genomic Context describing neighboring genes Neighboring gene phospholipase B domain containing 2 Neighboring gene solute carrier family 8 member B1 Neighboring gene IQ motif containing D Neighboring gene RBPJ interacting and tubulin associated 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two pore calcium channel protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052184.1 Reference ASM1607732v2

    Range
    43765921..43825581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044775828.1 → XP_044631763.1  two pore calcium channel protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C4LNF7, A0A9L0JXY3
    Conserved Domains (1) summary
    pfam00520
    Location:372 → 623
    Ion_trans; Ion transport protein

  2. XM_014858626.2 → XP_014714112.1  two pore calcium channel protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0JXY3
    Related
    ENSEASP00005058141.1, ENSEAST00005047200.1
    Conserved Domains (1) summary
    pfam00520
    Location:441 → 692
    Ion_trans; Ion transport protein

  3. XM_044775827.1 → XP_044631762.1  two pore calcium channel protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0JXY3
    Conserved Domains (1) summary
    pfam00520
    Location:441 → 692
    Ion_trans; Ion transport protein

  4. XM_044775829.1 → XP_044631764.1  two pore calcium channel protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C4LNF7, A0A9L0JXY3
    Related
    ENSEASP00005013594.2, ENSEAST00005014762.2
    Conserved Domains (1) summary
    pfam00520
    Location:372 → 623
    Ion_trans; Ion transport protein

  5. XM_014858627.2 → XP_014714113.1  two pore calcium channel protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A9L0JXY3
    Conserved Domains (2) summary
    pfam00520
    Location:142 → 330
    Ion_trans; Ion transport protein
    pfam12325
    Location:709 → 779
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
Nucleotide Protein
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