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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Equus asinus (ass) ]

Gene ID: 106832917, updated on 13-Mar-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
Ensembl:ENSEASG00005006627
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 8 NC_052184.1 (16451647..16712480, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014636726.1 (2147536..2407457, complement)

Chromosome 8 - NC_052184.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123287601 Neighboring gene ovochymase 1 Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC123287847 Neighboring gene uncharacterized LOC123287848

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052184.1 Reference ASM1607732v2

    Range
    16451647..16712480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044775282.1 → XP_044631217.1  protein O-mannosyl-transferase TMTC1 isoform X2

    UniProtKB/TrEMBL
    A0A9L0JXB8
    Related
    ENSEASP00005044907.1, ENSEAST00005055604.1
    Conserved Domains (2) summary
    TIGR02917
    Location:677 → 1056
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:763 → 791
    TPR; TPR repeat [structural motif]

  2. XM_044775283.1 → XP_044631218.1  protein O-mannosyl-transferase TMTC1 isoform X3

    UniProtKB/TrEMBL
    A0A9L0JXB8
    Related
    ENSEASP00005009259.2, ENSEAST00005010071.2
    Conserved Domains (2) summary
    TIGR02917
    Location:637 → 1043
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:750 → 778
    TPR; TPR repeat [structural motif]

  3. XM_014843846.2 → XP_014699332.2  protein O-mannosyl-transferase TMTC1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0IJH6, A0A9L0JXB8
    Related
    ENSEASP00005037208.1, ENSEAST00005074811.1
    Conserved Domains (2) summary
    TIGR02917
    Location:706 → 1112
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:819 → 847
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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