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COL9A1 collagen type IX alpha 1 chain [ Equus asinus (ass) ]

Gene ID: 106831831, updated on 13-Mar-2024

Summary

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Gene symbol
COL9A1
Gene description
collagen type IX alpha 1 chain
See related
Ensembl:ENSEASG00005037727
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
39
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 8 NC_052184.1 (91029900..91111752, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637721.1 (3409243..3493147, complement)

Chromosome 8 - NC_052184.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123288272 Neighboring gene collagen type XIX alpha 1 chain Neighboring gene uncharacterized LOC123287740 Neighboring gene family with sequence similarity 135 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(IX) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052184.1 Reference ASM1607732v2

    Range
    91029900..91111752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014842255.2 → XP_014697741.1  collagen alpha-1(IX) chain isoform X2

    Related
    ENSEASP00005035748.1, ENSEAST00005080734.1
    Conserved Domains (2) summary
    pfam01391
    Location:491 → 550
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:50 → 244
    TSPN; Thrombospondin N-terminal -like domains

  2. XM_044776958.1 → XP_044632893.1  collagen alpha-1(IX) chain isoform X1

    Conserved Domains (2) summary
    smart00210
    Location:50 → 244
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:429 → 616
    PHA03169; hypothetical protein; Provisional

  3. XM_044776960.1 → XP_044632895.1  collagen alpha-1(IX) chain isoform X3

    Related
    ENSEASP00005039080.1, ENSEAST00005079560.1
Nucleotide Protein
Heading Accession and Version

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