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ABCA5 ATP binding cassette subfamily A member 5 [ Equus asinus (ass) ]

Gene ID: 106830234, updated on 13-Mar-2024

Summary

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Gene symbol
ABCA5
Gene description
ATP binding cassette subfamily A member 5
See related
Ensembl:ENSEASG00005018662
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See ABCA5 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
43
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 13 NC_052189.1 (53126173..53197540, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637421.1 (2834431..2885457, complement)

Chromosome 13 - NC_052189.1Genomic Context describing neighboring genes Neighboring gene spindle and kinetochore-associated protein 1-like Neighboring gene ATP binding cassette subfamily A member 10 Neighboring gene uncharacterized LOC123276459 Neighboring gene uncharacterized LOC106830235

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cholesterol transporter ABCA5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052189.1 Reference ASM1607732v2

    Range
    53126173..53197540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044745180.1 → XP_044601115.1  cholesterol transporter ABCA5 isoform X3

    UniProtKB/TrEMBL
    A0A8C4MKR7, A0A8C4PSI9
    Conserved Domains (1) summary
    TIGR01257
    Location:107 → 1618
    rim_protein; retinal-specific rim ABC transporter

  2. XM_044745177.1 → XP_044601112.1  cholesterol transporter ABCA5 isoform X3

    UniProtKB/TrEMBL
    A0A8C4MKR7, A0A8C4PSI9
    Related
    ENSEASP00005027494.2, ENSEAST00005029857.2
    Conserved Domains (1) summary
    TIGR01257
    Location:107 → 1618
    rim_protein; retinal-specific rim ABC transporter

  3. XM_044745176.1 → XP_044601111.1  cholesterol transporter ABCA5 isoform X2

    UniProtKB/TrEMBL
    A0A8C4PSI9
    Conserved Domains (1) summary
    TIGR01257
    Location:191 → 1670
    rim_protein; retinal-specific rim ABC transporter

  4. XM_044745179.1 → XP_044601114.1  cholesterol transporter ABCA5 isoform X3

    UniProtKB/TrEMBL
    A0A8C4MKR7, A0A8C4PSI9
    Conserved Domains (1) summary
    TIGR01257
    Location:107 → 1618
    rim_protein; retinal-specific rim ABC transporter

  5. XM_044745175.1 → XP_044601110.1  cholesterol transporter ABCA5 isoform X1

    UniProtKB/TrEMBL
    A0A8C4PSI9
    Conserved Domains (1) summary
    TIGR01257
    Location:191 → 1702
    rim_protein; retinal-specific rim ABC transporter

  6. XM_044745182.1 → XP_044601117.1  cholesterol transporter ABCA5 isoform X4

    UniProtKB/TrEMBL
    A0A8C4PSI9
    Conserved Domains (1) summary
    TIGR01257
    Location:122 → 1484
    rim_protein; retinal-specific rim ABC transporter

  7. XM_044745181.1 → XP_044601116.1  cholesterol transporter ABCA5 isoform X4

    UniProtKB/TrEMBL
    A0A8C4PSI9
    Conserved Domains (1) summary
    TIGR01257
    Location:122 → 1484
    rim_protein; retinal-specific rim ABC transporter
Nucleotide Protein
Heading Accession and Version

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