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PDLIM5 PDZ and LIM domain 5 [ Equus asinus (ass) ]

Gene ID: 106830014, updated on 13-Mar-2024

Summary

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Gene symbol
PDLIM5
Gene description
PDZ and LIM domain 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 3 NC_052179.1 (173577200..173773484)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637388.1 (3678469..3877894, complement)

Chromosome 3 - NC_052179.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123283850 Neighboring gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 Neighboring gene hematopoietic prostaglandin D synthase Neighboring gene uncharacterized LOC123283851 Neighboring gene bone morphogenetic protein receptor type 1B Neighboring gene uncharacterized LOC123283853 Neighboring gene unc-5 netrin receptor C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052179.1 Reference ASM1607732v2

    Range
    173577200..173773484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044766331.1 → XP_044622266.1  PDZ and LIM domain protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C4M073
    Conserved Domains (5) summary
    cd09453
    Location:425 → 476
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:484 → 535
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    PHA03307
    Location:82 → 396
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl02475
    Location:543 → 597
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  2. XM_014839397.2 → XP_014694883.2  PDZ and LIM domain protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C4M073
    Conserved Domains (5) summary
    cd09453
    Location:420 → 471
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:479 → 530
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam05109
    Location:85 → 403
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02475
    Location:538 → 592
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  3. XM_044766332.1 → XP_044622267.1  PDZ and LIM domain protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C4M073
    Conserved Domains (4) summary
    cd09453
    Location:316 → 367
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    PHA03378
    Location:91 → 315
    PHA03378; EBNA-3B; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl02475
    Location:434 → 488
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  4. XM_014839400.2 → XP_014694886.2  PDZ and LIM domain protein 5 isoform X4

    UniProtKB/TrEMBL
    A0A8C4M073
    Conserved Domains (3) summary
    cd09453
    Location:311 → 362
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl02475
    Location:429 → 483
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  5. XM_044766334.1 → XP_044622269.1  PDZ and LIM domain protein 5 isoform X6

    UniProtKB/TrEMBL
    A0A8C4M4R6
    Conserved Domains (1) summary
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  6. XM_044766333.1 → XP_044622268.1  PDZ and LIM domain protein 5 isoform X5

    Conserved Domains (3) summary
    cd09453
    Location:303 → 354
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    PHA03378
    Location:59 → 302
    PHA03378; EBNA-3B; Provisional
    cl02475
    Location:421 → 475
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
Heading Accession and Version

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