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LRRCC1 leucine rich repeat and coiled-coil centrosomal protein 1 [ Equus asinus (ass) ]

Gene ID: 106829856, updated on 13-Mar-2024

Summary

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Gene symbol
LRRCC1
Gene description
leucine rich repeat and coiled-coil centrosomal protein 1
See related
Ensembl:ENSEASG00005018689
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See LRRCC1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 12 NC_052188.1 (102941128..102972414)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637333.1 (1220929..1251674, complement)

Chromosome 12 - NC_052188.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 13-like Neighboring gene solute carrier family 7 member 13-like Neighboring gene uncharacterized LOC123290074 Neighboring gene E2F transcription factor 5 Neighboring gene carbonic anhydrase 13 Neighboring gene uncharacterized LOC123290073 Neighboring gene ribosomal biogenesis factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and coiled-coil domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052188.1 Reference ASM1607732v2

    Range
    102941128..102972414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044780326.1 → XP_044636261.1  leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0K567
    Related
    ENSEASP00005060621.1, ENSEAST00005064622.1
    Conserved Domains (5) summary
    PHA02562
    Location:833 → 1017
    46; endonuclease subunit; Provisional
    COG1196
    Location:411 → 666
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:562 → 914
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00033
    Location:40 → 61
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:38 → 166
    internalin_A; class 1 internalin InlA

  2. XM_044780328.1 → XP_044636263.1  leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X3

    Conserved Domains (5) summary
    PHA02562
    Location:807 → 991
    46; endonuclease subunit; Provisional
    COG1196
    Location:385 → 640
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:536 → 888
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00033
    Location:40 → 61
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:38 → 166
    internalin_A; class 1 internalin InlA

  3. XM_044780327.1 → XP_044636262.1  leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C4MJE0
    Related
    ENSEASP00005027459.1, ENSEAST00005029812.2
    Conserved Domains (6) summary
    PHA02562
    Location:811 → 995
    46; endonuclease subunit; Provisional
    COG1196
    Location:389 → 644
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:540 → 892
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00031
    Location:40 → 61
    LRR_1; leucine-rich repeat [structural motif]
    NF033188
    Location:26 → 262
    internalin_H; InlH/InlC2 family class 1 internalin
    NF033189
    Location:31 → 144
    internalin_A; class 1 internalin InlA

  4. XM_044780329.1 → XP_044636264.1  leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C4MQT6
    Related
    ENSEASP00005027457.2, ENSEAST00005029810.2
    Conserved Domains (4) summary
    COG1196
    Location:411 → 666
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:562 → 808
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00033
    Location:40 → 61
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:38 → 166
    internalin_A; class 1 internalin InlA
Nucleotide Protein
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