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SYTL4 synaptotagmin like 4 [ Equus asinus (ass) ]

Gene ID: 106823958, updated on 13-Mar-2024

Summary

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Gene symbol
SYTL4
Gene description
synaptotagmin like 4
See related
Ensembl:ENSEASG00005004633
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
18
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) X NC_052207.1 (107598821..107647919)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638544.1 (24179..73251)

Chromosome X - NC_052207.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106847634 Neighboring gene uncharacterized LOC123282451 Neighboring gene sushi repeat containing protein X-linked 2 Neighboring gene tetraspanin 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in exocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052207.1 Reference ASM1607732v2

    Range
    107598821..107647919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014829971.2 → XP_014685457.1  synaptotagmin-like protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A8C4L602
    Conserved Domains (3) summary
    cd04020
    Location:413 → 578
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd04029
    Location:274 → 398
    C2A_SLP-4_5; C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5
    cl22851
    Location:8 → 40
    PHD_SF; PHD finger superfamily

  2. XM_014829969.2 → XP_014685455.1  synaptotagmin-like protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C4L602
    Conserved Domains (3) summary
    cd04020
    Location:485 → 650
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd04029
    Location:346 → 470
    C2A_SLP-4_5; C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5
    cd15764
    Location:58 → 107
    FYVE_Slp4; FYVE-related domain found in synaptotagmin-like protein 4 (Slp4) and similar proteins

  3. XM_014829970.2 → XP_014685456.1  synaptotagmin-like protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A8C4L602
    Conserved Domains (3) summary
    cd04020
    Location:425 → 590
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd04029
    Location:286 → 410
    C2A_SLP-4_5; C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5
    cl22851
    Location:8 → 40
    PHD_SF; PHD finger superfamily

  4. XM_044763051.1 → XP_044618986.1  synaptotagmin-like protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C4L3K5, A0A8C4L602
    Conserved Domains (4) summary
    cd04020
    Location:497 → 662
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd04029
    Location:358 → 482
    C2A_SLP-4_5; C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5
    cd15764
    Location:58 → 107
    FYVE_Slp4; FYVE-related domain found in synaptotagmin-like protein 4 (Slp4) and similar proteins
    cl22851
    Location:8 → 121
    PHD_SF; PHD finger superfamily

  5. XM_014829967.2 → XP_014685453.1  synaptotagmin-like protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C4L3K5, A0A8C4L602
    Related
    ENSEASP00005006260.1, ENSEAST00005006847.2
    Conserved Domains (4) summary
    cd04020
    Location:497 → 662
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd04029
    Location:358 → 482
    C2A_SLP-4_5; C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5
    cd15764
    Location:58 → 107
    FYVE_Slp4; FYVE-related domain found in synaptotagmin-like protein 4 (Slp4) and similar proteins
    cl22851
    Location:8 → 121
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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