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TIA1 TIA1 cytotoxic granule associated RNA binding protein [ Alligator mississippiensis (American alligator) ]

Gene ID: 106736918, updated on 13-Mar-2024

Summary

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Gene symbol
TIA1
Gene description
TIA1 cytotoxic granule associated RNA binding protein
Locus tag
Y1Q_0013958
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
TIAL1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 7 NC_081830.1 (12497538..12520494, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708284.1 (777611..800621)

Chromosome 7 - NC_081830.1Genomic Context describing neighboring genes Neighboring gene low molecular weight neuronal intermediate filament Neighboring gene chromosome 7 C2orf42 homolog Neighboring gene uncharacterized LOC109282020 Neighboring gene uncharacterized LOC106740293 Neighboring gene uncharacterized LOC109282014 Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytotoxic granule associated RNA binding protein TIA1
Names
nucleolysin TIAR

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081830.1 Reference rAllMis1 Primary Assembly

    Range
    12497538..12520494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019482683.2 → XP_019338228.1  cytotoxic granule associated RNA binding protein TIA1 isoform X2

  2. XM_006272003.4 → XP_006272065.1  cytotoxic granule associated RNA binding protein TIA1 isoform X1

    UniProtKB/TrEMBL
    A0A151P516
    Conserved Domains (4) summary
    cd12615
    Location:8 → 81
    RRM1_TIA1; RNA recognition motif 1 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cd12618
    Location:105 → 184
    RRM2_TIA1; RNA recognition motif 2 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cd12621
    Location:214 → 287
    RRM3_TIA1; RNA recognition motif 3 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    TIGR01661
    Location:6 → 280
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  3. XM_059730578.1 → XP_059586561.1  cytotoxic granule associated RNA binding protein TIA1 isoform X3

  4. XM_059730579.1 → XP_059586562.1  cytotoxic granule associated RNA binding protein TIA1 isoform X4

Nucleotide Protein
Heading Accession and Version

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