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LOC106613025 neural cell adhesion molecule 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106613025, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106613025
Gene description
neural cell adhesion molecule 1
See related
Ensembl:ENSSSAG00000067864
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
ncam1
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Genomic context

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Location:
chromosome: ssa09
Exon count:
25
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa09 NC_059450.1 (132406060..132512583, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa09 NC_027308.1 (115432936..115535049, complement)

Chromosome ssa09 - NC_059450.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123744742 Neighboring gene zinc finger and BTB domain-containing protein 16-A-like Neighboring gene uncharacterized LOC106613024 Neighboring gene cell adhesion molecule 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables axon guidance receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059450.1 Reference Ssal_v3.1

    Range
    132406060..132512583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014214871.2 → XP_014070346.2  neural cell adhesion molecule 1 isoform X3

  2. XM_014214880.2 → XP_014070355.2  neural cell adhesion molecule 1 isoform X13

  3. XM_014214874.2 → XP_014070349.2  neural cell adhesion molecule 1 isoform X6

  4. XM_014214877.2 → XP_014070352.2  neural cell adhesion molecule 1 isoform X14

  5. XM_014214876.2 → XP_014070351.2  neural cell adhesion molecule 1 isoform X12

  6. XM_014214870.2 → XP_014070345.2  neural cell adhesion molecule 1 isoform X2

  7. XM_014214873.2 → XP_014070348.2  neural cell adhesion molecule 1 isoform X5

  8. XM_014214872.2 → XP_014070347.2  neural cell adhesion molecule 1 isoform X4

  9. XM_014214869.2 → XP_014070344.2  neural cell adhesion molecule 1 isoform X1

  10. XM_014214879.2 → XP_014070354.2  neural cell adhesion molecule 1 isoform X11

    Related
    ENSSSAP00000100504.2, ENSSSAT00000135006.2

  11. XM_014214875.2 → XP_014070350.1  neural cell adhesion molecule 1 isoform X7

    UniProtKB/TrEMBL
    A0A1S3T178
    Related
    ENSSSAP00000099602.2, ENSSSAT00000134082.2
    Conserved Domains (6) summary
    cd00096
    Location:434 → 505
    Ig; Immunoglobulin domain
    smart00408
    Location:128 → 189
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:219 → 298
    IG_like; Immunoglobulin like
    cd00063
    Location:630 → 721
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 109
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:300 → 414
    Ig; Immunoglobulin domain

  12. XM_014214882.2 → XP_014070357.1  neural cell adhesion molecule 1 isoform X19

    UniProtKB/TrEMBL
    A0A1S3T1A6
    Conserved Domains (6) summary
    cd00096
    Location:416 → 487
    Ig; Immunoglobulin domain
    smart00408
    Location:128 → 189
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:219 → 298
    IG_like; Immunoglobulin like
    cd00063
    Location:596 → 687
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 109
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:300 → 396
    Ig; Immunoglobulin domain

  13. XM_045724633.1 → XP_045580589.1  neural cell adhesion molecule 1 isoform X15

  14. XM_045724635.1 → XP_045580591.1  neural cell adhesion molecule 1 isoform X17

  15. XM_045724631.1 → XP_045580587.1  neural cell adhesion molecule 1 isoform X9

  16. XM_045724630.1 → XP_045580586.1  neural cell adhesion molecule 1 isoform X8

  17. XM_014214881.2 → XP_014070356.1  neural cell adhesion molecule 1 isoform X18

    UniProtKB/TrEMBL
    A0A1S3T189
    Related
    ENSSSAP00000099635.2, ENSSSAT00000134116.2
    Conserved Domains (6) summary
    cd00096
    Location:416 → 487
    Ig; Immunoglobulin domain
    smart00408
    Location:128 → 189
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:219 → 298
    IG_like; Immunoglobulin like
    cd00063
    Location:595 → 686
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 109
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:300 → 396
    Ig; Immunoglobulin domain

  18. XM_045724634.1 → XP_045580590.1  neural cell adhesion molecule 1 isoform X16

    Related
    ENSSSAP00000131255.1, ENSSSAT00000161480.1

  19. XM_045724632.1 → XP_045580588.1  neural cell adhesion molecule 1 isoform X10

Nucleotide Protein
Heading Accession and Version

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