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LOC106606430 ubiquitin carboxyl-terminal hydrolase 36 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106606430, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106606430
Gene description
ubiquitin carboxyl-terminal hydrolase 36
See related
Ensembl:ENSSSAG00000084680
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
usp36
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Genomic context

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Location:
chromosome: ssa03
Exon count:
21
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa03 NC_059444.1 (86971315..87012376)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa06 NC_027305.1 (9400481..9446215)

Chromosome ssa03 - NC_059444.1Genomic Context describing neighboring genes Neighboring gene metalloproteinase inhibitor 2 Neighboring gene Metalloproteinase inhibitor 2 Neighboring gene Cytohesin-1 Neighboring gene suppressor of cytokine signaling 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon. Warren IA, et al. Genome Biol Evol, 2014 Jun 19. PMID 24951567, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 36
Names
ubiquitin specific peptidase 36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059444.1 Reference Ssal_v3.1

    Range
    86971315..87012376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045715689.1 → XP_045571645.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X1

  2. XM_045715691.1 → XP_045571647.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X2

  3. XM_045715692.1 → XP_045571648.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X3

    Related
    ENSSSAP00000162145.1, ENSSSAT00000241531.1

  4. XM_045715690.1 → XP_045571646.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X1

Nucleotide Protein
Heading Accession and Version

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